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FIDEA 1.1


A web server designed to facilitate the functional interpretation of differential expression analysis. It is aimed at allowing experimentalists to “play with” their RNA-Seq data in an easy and at the same time exhaustive fashion within a single tool.

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DIGIT


A database of immunoglobulin variable domain sequences and related search and modelling tools

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CoCoMaps


A server for calculating contact maps of X-ray, NMR and predicted structures. COCOMAPS (bioCOmplexes COntact MAPS) is a web application to easily and effectively analyse and visualize the interface in biological complexes (such as protein-protein, protein-DNA and protein-RNA complexes), by making use of intermolecular contact maps. Reference: Vangone et al, 2011

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ConsRank


ConsRank is a server for the analysis, comparison and ranking of docking models based on inter-residue contacts. CONSRANK (CONSensus-RANKing) is a web service to easily and effectively analyse and rank docking models of protein-protein and protein-nucleic acid complexes, based on the frequency of inter-residue contacts. Reference: Chermak et al, 2015

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PMDB


PMDB collects three dimensional protein models obtained by structure prediction methods

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Tabhu 1.0


Tabhu is a web server for antibody humanisation specifically designed to help researcher in each step of a humanisation experiment. It provides tools to: Select the suitable humane template; Select the grafting region; Predict the non-human and humanised antibody paratope; Select the minimum set of back-mutations to retain the parental binding affinity; Build the three-dimensional … Continue reading Tabhu 1.0

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proABC 1.0


proABC is a predictor of Antibody-Antigen interactions based on the Random Forest Algorithm. User submitted sequences are automatically aligned and annotated according to their source organism and germline families.

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PIGS 1.0


PIGS is a web server for the automatic modeling of immunoglobulin variable domains based on the canonical structure method. It has a user-friendly and flexible interface, that allows the user to choose templates (for the frameworks and the loops) and modeling strategies in an automatic or manual fashion.

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ASPic


Aspic predicts the gene structure by aligning ESTs against a genomic region

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BioMas


BioMas (Bioinformatic analysis of Metagenomic AmpliconS) is a user-friendly pipeline for the assessment of the taxonomic composition of microbial communities from amplicon-based NGS data. The current version of BioMaS can be used for the analysis of Illumina MiSeq reads (SE or PE) aimed at the determination of bacterial and fungal populations through the TANGO-based comparative … Continue reading BioMas

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