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SNPack

Institute Provider

Università di Padova

Primary Contact name

Available versions

1.0

Topics

Description

C++ library with novel algorithms and a novel file format for compressing and retrieving SNP data, specifically designed for large-scale association studies. The algorithm is based on two main ideas: (i) compress linkage disequilibrium blocks in terms of differences with a reference SNP and (ii) compress reference SNPs exploiting information on their call rate and minor allele frequency.

Development stage

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