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Docker4Circ

Institute Provider

Università di Torino

Primary Contact name

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Available versions

version 1

Topics

Description

It is a new work-flow designed for a comprehensive analysis of circRNAs composed of: the circRNAs prediction, their classification and annotation using public databases, the back-splicing sequence reconstruction, the internal alternative structure definition, the alignment-free circRNAs quantification from RNA-Seq reads, and their differential expression analysis.
Docker4Circ was specifically designed for making easier and more accessible circRNA analysis thanks to its containerization and an available user-friendly Java GUI Interface. Furthermore, Docker4Circ ensures a reproducible analysis because all its tasks were embedded into an docker image following guideline provided by Reproducible
Bioinformatics Project (RBP, http://reproducible-bioinformatics.org/).

Programming Language

Development stage

Mature

Licence

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Cost

Free of charge

Accessibility

Open access

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