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DIGIT


A database of immunoglobulin variable domain sequences and related search and modelling tools

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FIDEA 1.1


A web server designed to facilitate the functional interpretation of differential expression analysis. It is aimed at allowing experimentalists to “play with” their RNA-Seq data in an easy and at the same time exhaustive fashion within a single tool.

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Maistas 1.0


Maìstas is a fully automatic pipeline aimed at building and assessing three-dimensional models for alternative splicing isoforms.

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PICMI 1.0


PICMI is a tool to map nucleotide and amino acid variations on genomes and on all gene isoforms.

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PMDB


PMDB collects three dimensional protein models obtained by structure prediction methods

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PIGS 1.0


PIGS is a web server for the automatic modeling of immunoglobulin variable domains based on the canonical structure method. It has a user-friendly and flexible interface, that allows the user to choose templates (for the frameworks and the loops) and modeling strategies in an automatic or manual fashion.

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Tabhu 1.0


Tabhu is a web server for antibody humanisation specifically designed to help researcher in each step of a humanisation experiment. It provides tools to: Select the suitable humane template; Select the grafting region; Predict the non-human and humanised antibody paratope; Select the minimum set of back-mutations to retain the parental binding affinity; Build the three-dimensional … Continua a leggere Tabhu 1.0

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proABC 1.0


proABC is a predictor of Antibody-Antigen interactions based on the Random Forest Algorithm. User submitted sequences are automatically aligned and annotated according to their source organism and germline families.

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Phospho3d 2.0


Phospho3D is a database of three-dimensional structures of phosphorylation sites which stores information retrieved from the Phospho.ELM database and which is enriched with structural information and annotations at the residue level. The database also collects the results of a large-scale structural comparison procedure providing clues for the identification of new putative phosphorylation sites.

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TiPs 1.0


TiPs collects predicted drug targets in 150 pathogen species. The structural details of the drug mode of binding are also provided. Predictions are made using the information coming from drug-target three-dimensional complexes and by exploiting the homology relationships of known drug targets with pathogen proteins. Predicted pathogen targets are further annotated with sequence, structural and … Continua a leggere TiPs 1.0

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